I have pasted a screenshot of where it had got to and pasted a copy of the log, it would seem that autopatcher is triong to install patches (.net) that have a prerequisit of SP1 before SP1 has been installed.
► Show Spoiler
Autopatcher v6.2.2 Has Started at 29/06/2016 16:10:22
Starting Autopatcher From C:\Users\x\Desktop\AutoPatcher-v6_2_02
Checking if an update is already running.
Detected OS: English (1033) Microsoft Windows 7 Professional x86
Current Locale: English / Non-Unicode Default: English
Module 'modules\Components\__dotnet\NDP46-KB3143693-x86.apm' EXPLICITLY refers to its module folder as 'modules\Components\__dotnet\dotNET-x64_files'. However, such folder does not exist!
Deleting File C:\#AutoPatcher_Temp#\apengine.rti
Deleting File C:\#AutoPatcher_Temp#\common.rti
Deleting File C:\#AutoPatcher_Temp#\dotnet_x86.rti
Deleting File C:\#AutoPatcher_Temp#\extras.rti
Deleting File C:\#AutoPatcher_Temp#\msredist.rti
Deleting File C:\#AutoPatcher_Temp#\seven_x86_sp1.rti
Installing Security Update for Windows 7 (KB2918614)
Installing Security Update for Windows 7 (KB2479943)
Installing Security Update for Windows 7 (KB2506212)
Installing Security Update for Windows 7 (KB2491683)
Installing Security Update for Windows 7 (KB2509553)
Installing Security Update for Windows 7 (KB2536275)
Installing Security Update for Windows 7 (KB2544893)
Installing Security Update for Windows 7 (KB2503665)
Installing Security Update for Windows 7 (KB2560656)
Installing Security Update for Windows 7 (KB2536276)
Installing Security Update for Windows 7 (KB2570947)
Installing Security Update for Windows 7 (KB2579686)
Installing Security Update for Windows 7 (KB2564958)
Installing Security Update for Windows 7 (KB2620704)
Installing Security Update for Windows 7 (KB2619339)
Installing Security Update for Windows 7 (KB2584146)
Installing Security Update for Windows 7 (KB2644615)
Installing Security Update for Windows 7 (KB2585542)
Installing Security Update for Windows 7 (KB2631813)
Installing Security Update for Windows 7 (KB2654428)
Installing Security Update for Windows 7 (KB2653956)
Installing Security Update for Windows 7 (KB2690533)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2604115)
Installing Security Update for Windows 7 (KB2685939)
Installing Security Update for Windows 7 (KB2667402)
Installing Security Update for Windows 7 (KB2655992)
Installing Security Update for Windows 7 (KB2712808)
Installing Security Update for Windows 7 (KB2705219 V2)
Installing Security Update for Windows 7 (KB2743555)
Installing Security Update for Windows 7 (KB2758857)
Installing Security Update for Windows 7 (KB2770660)
Installing Security Update for Windows 7 (KB2757638)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2742599)
Installing Security Update for Windows 7 (KB2807986)
Installing Security Update for Windows 7 (KB2840149)
Installing Update for Windows 7 (KB2818604)
Installing Security Update for Windows 7 (KB2813430)
Installing Security Update for Windows 7 (KB2839894)
Installing Security Update for Windows 7 (KB2847927)
Installing Security Update for Windows 7 (KB2835361)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2840631)
Installing Security Update for Windows 7 (KB2803821)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2861698)
Installing Security Update for Windows 7 (KB2884256)
Installing Security Update for Windows 7 (KB2868038)
Installing Security Update for Windows 7 (KB2864202)
Installing Security Update for Windows 7 (KB2862335)
Installing Security Update for Windows 7 (KB2868626)
Installing Security Update for Windows 7 (KB2862152)
Installing Cumulative Security Update for ActiveX Killbits for Windows 7 (KB2900986)
Installing Security Update for Windows 7 (KB2893294)
Installing Security Update for Windows 7 (KB2892074)
Installing Security Update for Windows 7 (KB2862330-v2)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2911501)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2898851)
Installing Security Update for Windows 7 (KB2871997)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2931356)
Installing Security Update for Windows 7 (KB3063858)
Installing Security Update for Windows 7 (KB2957503)
Installing Security Update for Windows 7 (KB2957189)
Installing Security Update for Windows 7 (KB2973201)
Installing Security Update for Windows 7 (KB2973351)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2937610)
Installing Security Update for Windows 7 (KB2978742)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2943357)
Installing Security Update for Windows 7 (KB2993651)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2894844)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2973112)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2972211)
Installing Security Update for Windows 7 (KB2984972)
Installing Security Update for Windows 7 (KB2984976)
Installing Security Update for Windows 7 (KB2977292)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2968294)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2972100)
Installing Security Update for Windows 7 (KB3003743)
Installing Security Update for Windows 7 (KB3005607)
Installing Security Update for Windows 7 (KB3010788)
Installing Security Update for Windows 7 (KB2992611)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2978120)
Installing Security Update for Windows 7 (KB3011780)
Installing Security Update for Windows 7 (KB3013126)
Installing Security Update for Windows 7 (KB3021674)
Installing Security Update for Windows 7 (KB3022777)
Installing Security Update for Windows 7 (KB3000483)
Installing Security Update for Windows 7 (KB3004361)
Installing Security Update for Windows 7 (KB3004375-v3)
Installing Security Update for Windows 7 (KB3031432)
Installing Security Update for Windows 7 (KB3033889)
Installing Security Update for Windows 7 (KB3035132)
Installing Security Update for Windows 7 (KB3036493)
Installing Security Update for Windows 7 (KB3033929)
Installing Security Update for Windows 7 (KB3030377)
Installing Security Update for Windows 7 (KB3045685)
Installing Security Update for Windows 7 (KB3042553)
Installing Security Update for Windows 7 (KB3045999)
Installing Security Update for Windows 7 (KB3046269)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3037574)
Installing Security Update for Windows 7 (KB3059317)
Installing Security Update for Windows 7 (KB3042058)
Installing Security Update for Windows 7 (KB3045171)
Installing Security Update for Windows 7 (KB3055642)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3023215)
Installing Security Update for Windows 7 (KB3072630)
Installing Security Update for Windows 7 (KB3072633)
Installing Security Update for Windows 7 (KB3067903)
Installing Security Update for Windows 7 (KB3046017)
Installing Security Update for Windows 7 (KB3060716)
Installing Security Update for Windows 7 (KB3071756)
Installing Security Update for Windows 7 (KB3076949)
Installing Security Update for Windows 7 (KB3076895)
Installing Security Update for Windows 7 (KB3078601)
Installing Security Update for Microsoft .NET Framework 2.0 SP2 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3074543)
Installing Security Update for Windows 7 (KB3084135)
Installing Security Update for Windows 7 (KB3087039)
Installing Security Update for Windows 7 (KB3080446)
Installing Security Update for Windows 7 (KB3093513)
Installing Security Update for Windows 7 (KB3097966)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3097989)
Installing Security Update for Windows 7 (KB3101722)
Installing Security Update for Windows 7 (KB3081320)
Installing Security Update for Windows 7 (KB3092601)
Installing Security Update for Windows 7 (KB3101746)
Installing Security Update for Windows 7 (KB3097877)
Installing Security Update for Windows 7 (KB3108371)
Installing Security Update for Windows 7 (KB3108381)
Installing Security Update for Windows 7 (KB3109094)
Installing Security Update for Windows 7 (KB3109103)
Installing Security Update for Windows 7 (KB3108670)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 Service Pack 1 and Windows Server 2008 R2 Service Pack 1 (KB3122648)
Installing Security Update for Windows 7 (KB3123479)
Installing Security Update for Windows 7 (KB3121461)
Installing Security Update for Windows 7 (KB3108664)
Installing Security Update for Windows 7 (KB3110329)
Installing Security Update for Windows 7 (KB3109560)
Installing Security Update for Microsoft.NET Framework 4.6.1 on Windows 7 SP1, Windows Server 2008 R2 SP1 (KB3122661)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 Service Pack 1 and Windows Server 2008 R2 Service Pack 1 (KB3127220)
Installing Security Update for Microsoft.NET Framework 4.6.1 on Windows 7 SP1, Windows Server 2008 R2 SP1 (KB3127233)
Installing Security Update for Windows 7 (KB3115858)
Installing Security Update for Windows 7 (KB3126593)
Installing Security Update for Windows 7 (KB3126587)
Installing Security Update for Windows 7 (KB3124280)
Installing Security Update for Windows 7 (KB3126446)
Installing Security Update for Windows 7 (KB3138910)
Installing Security Update for Windows 7 (KB3139940)
Installing Security Update for Windows 7 (KB3138962)
Installing Security Update for Windows 7 (KB3139398)
Installing Security Update for Windows 7 (KB3139914)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3135983)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3142042)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3142024)
Installing Security Update for Microsoft .NET Framework 4.6.1 on Windows 7 SP1, Windows Server 2008 R2 SP1 (KB3143693)
Error Detected: File not found in RunCommand At Line 104
Attempted Commandline: "C:\Users\user1\Desktop\AutoPatcher-v6_2_02\modules\Components\__dotnet\dotNET-x64_files\NDP46-KB3143693-x86.exe" /quiet /norestart
Starting Autopatcher From C:\Users\x\Desktop\AutoPatcher-v6_2_02
Checking if an update is already running.
Detected OS: English (1033) Microsoft Windows 7 Professional x86
Current Locale: English / Non-Unicode Default: English
Module 'modules\Components\__dotnet\NDP46-KB3143693-x86.apm' EXPLICITLY refers to its module folder as 'modules\Components\__dotnet\dotNET-x64_files'. However, such folder does not exist!
Deleting File C:\#AutoPatcher_Temp#\apengine.rti
Deleting File C:\#AutoPatcher_Temp#\common.rti
Deleting File C:\#AutoPatcher_Temp#\dotnet_x86.rti
Deleting File C:\#AutoPatcher_Temp#\extras.rti
Deleting File C:\#AutoPatcher_Temp#\msredist.rti
Deleting File C:\#AutoPatcher_Temp#\seven_x86_sp1.rti
Installing Security Update for Windows 7 (KB2918614)
Installing Security Update for Windows 7 (KB2479943)
Installing Security Update for Windows 7 (KB2506212)
Installing Security Update for Windows 7 (KB2491683)
Installing Security Update for Windows 7 (KB2509553)
Installing Security Update for Windows 7 (KB2536275)
Installing Security Update for Windows 7 (KB2544893)
Installing Security Update for Windows 7 (KB2503665)
Installing Security Update for Windows 7 (KB2560656)
Installing Security Update for Windows 7 (KB2536276)
Installing Security Update for Windows 7 (KB2570947)
Installing Security Update for Windows 7 (KB2579686)
Installing Security Update for Windows 7 (KB2564958)
Installing Security Update for Windows 7 (KB2620704)
Installing Security Update for Windows 7 (KB2619339)
Installing Security Update for Windows 7 (KB2584146)
Installing Security Update for Windows 7 (KB2644615)
Installing Security Update for Windows 7 (KB2585542)
Installing Security Update for Windows 7 (KB2631813)
Installing Security Update for Windows 7 (KB2654428)
Installing Security Update for Windows 7 (KB2653956)
Installing Security Update for Windows 7 (KB2690533)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2604115)
Installing Security Update for Windows 7 (KB2685939)
Installing Security Update for Windows 7 (KB2667402)
Installing Security Update for Windows 7 (KB2655992)
Installing Security Update for Windows 7 (KB2712808)
Installing Security Update for Windows 7 (KB2705219 V2)
Installing Security Update for Windows 7 (KB2743555)
Installing Security Update for Windows 7 (KB2758857)
Installing Security Update for Windows 7 (KB2770660)
Installing Security Update for Windows 7 (KB2757638)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2742599)
Installing Security Update for Windows 7 (KB2807986)
Installing Security Update for Windows 7 (KB2840149)
Installing Update for Windows 7 (KB2818604)
Installing Security Update for Windows 7 (KB2813430)
Installing Security Update for Windows 7 (KB2839894)
Installing Security Update for Windows 7 (KB2847927)
Installing Security Update for Windows 7 (KB2835361)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2840631)
Installing Security Update for Windows 7 (KB2803821)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2861698)
Installing Security Update for Windows 7 (KB2884256)
Installing Security Update for Windows 7 (KB2868038)
Installing Security Update for Windows 7 (KB2864202)
Installing Security Update for Windows 7 (KB2862335)
Installing Security Update for Windows 7 (KB2868626)
Installing Security Update for Windows 7 (KB2862152)
Installing Cumulative Security Update for ActiveX Killbits for Windows 7 (KB2900986)
Installing Security Update for Windows 7 (KB2893294)
Installing Security Update for Windows 7 (KB2892074)
Installing Security Update for Windows 7 (KB2862330-v2)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2911501)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2898851)
Installing Security Update for Windows 7 (KB2871997)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2931356)
Installing Security Update for Windows 7 (KB3063858)
Installing Security Update for Windows 7 (KB2957503)
Installing Security Update for Windows 7 (KB2957189)
Installing Security Update for Windows 7 (KB2973201)
Installing Security Update for Windows 7 (KB2973351)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2937610)
Installing Security Update for Windows 7 (KB2978742)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2943357)
Installing Security Update for Windows 7 (KB2993651)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2894844)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2973112)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2972211)
Installing Security Update for Windows 7 (KB2984972)
Installing Security Update for Windows 7 (KB2984976)
Installing Security Update for Windows 7 (KB2977292)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2968294)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2972100)
Installing Security Update for Windows 7 (KB3003743)
Installing Security Update for Windows 7 (KB3005607)
Installing Security Update for Windows 7 (KB3010788)
Installing Security Update for Windows 7 (KB2992611)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB2978120)
Installing Security Update for Windows 7 (KB3011780)
Installing Security Update for Windows 7 (KB3013126)
Installing Security Update for Windows 7 (KB3021674)
Installing Security Update for Windows 7 (KB3022777)
Installing Security Update for Windows 7 (KB3000483)
Installing Security Update for Windows 7 (KB3004361)
Installing Security Update for Windows 7 (KB3004375-v3)
Installing Security Update for Windows 7 (KB3031432)
Installing Security Update for Windows 7 (KB3033889)
Installing Security Update for Windows 7 (KB3035132)
Installing Security Update for Windows 7 (KB3036493)
Installing Security Update for Windows 7 (KB3033929)
Installing Security Update for Windows 7 (KB3030377)
Installing Security Update for Windows 7 (KB3045685)
Installing Security Update for Windows 7 (KB3042553)
Installing Security Update for Windows 7 (KB3045999)
Installing Security Update for Windows 7 (KB3046269)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3037574)
Installing Security Update for Windows 7 (KB3059317)
Installing Security Update for Windows 7 (KB3042058)
Installing Security Update for Windows 7 (KB3045171)
Installing Security Update for Windows 7 (KB3055642)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3023215)
Installing Security Update for Windows 7 (KB3072630)
Installing Security Update for Windows 7 (KB3072633)
Installing Security Update for Windows 7 (KB3067903)
Installing Security Update for Windows 7 (KB3046017)
Installing Security Update for Windows 7 (KB3060716)
Installing Security Update for Windows 7 (KB3071756)
Installing Security Update for Windows 7 (KB3076949)
Installing Security Update for Windows 7 (KB3076895)
Installing Security Update for Windows 7 (KB3078601)
Installing Security Update for Microsoft .NET Framework 2.0 SP2 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3074543)
Installing Security Update for Windows 7 (KB3084135)
Installing Security Update for Windows 7 (KB3087039)
Installing Security Update for Windows 7 (KB3080446)
Installing Security Update for Windows 7 (KB3093513)
Installing Security Update for Windows 7 (KB3097966)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3097989)
Installing Security Update for Windows 7 (KB3101722)
Installing Security Update for Windows 7 (KB3081320)
Installing Security Update for Windows 7 (KB3092601)
Installing Security Update for Windows 7 (KB3101746)
Installing Security Update for Windows 7 (KB3097877)
Installing Security Update for Windows 7 (KB3108371)
Installing Security Update for Windows 7 (KB3108381)
Installing Security Update for Windows 7 (KB3109094)
Installing Security Update for Windows 7 (KB3109103)
Installing Security Update for Windows 7 (KB3108670)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 Service Pack 1 and Windows Server 2008 R2 Service Pack 1 (KB3122648)
Installing Security Update for Windows 7 (KB3123479)
Installing Security Update for Windows 7 (KB3121461)
Installing Security Update for Windows 7 (KB3108664)
Installing Security Update for Windows 7 (KB3110329)
Installing Security Update for Windows 7 (KB3109560)
Installing Security Update for Microsoft.NET Framework 4.6.1 on Windows 7 SP1, Windows Server 2008 R2 SP1 (KB3122661)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 Service Pack 1 and Windows Server 2008 R2 Service Pack 1 (KB3127220)
Installing Security Update for Microsoft.NET Framework 4.6.1 on Windows 7 SP1, Windows Server 2008 R2 SP1 (KB3127233)
Installing Security Update for Windows 7 (KB3115858)
Installing Security Update for Windows 7 (KB3126593)
Installing Security Update for Windows 7 (KB3126587)
Installing Security Update for Windows 7 (KB3124280)
Installing Security Update for Windows 7 (KB3126446)
Installing Security Update for Windows 7 (KB3138910)
Installing Security Update for Windows 7 (KB3139940)
Installing Security Update for Windows 7 (KB3138962)
Installing Security Update for Windows 7 (KB3139398)
Installing Security Update for Windows 7 (KB3139914)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3135983)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3142042)
Installing Security Update for Microsoft .NET Framework 3.5.1 on Windows 7 SP1 and Windows Server 2008 R2 SP1 (KB3142024)
Installing Security Update for Microsoft .NET Framework 4.6.1 on Windows 7 SP1, Windows Server 2008 R2 SP1 (KB3143693)
Error Detected: File not found in RunCommand At Line 104
Attempted Commandline: "C:\Users\user1\Desktop\AutoPatcher-v6_2_02\modules\Components\__dotnet\dotNET-x64_files\NDP46-KB3143693-x86.exe" /quiet /norestart